- a -

• acceptQ() : baseHamiltonian
• acceptRate() : baseHamiltonian
• addChain() : chainBundle< T >

- b -

• baseHamiltonian() : baseHamiltonian
• beginEvolveP() : baseHamiltonian , dynamMetric , constMetric
• bounceP() : diagSoftAbsMetric , diagOuterSoftAbsMetric , softAbsMetric , denseFisherMetric , denseConstMetric , baseHamiltonian , diagConstMetric , outerSoftAbsMetric
• burn() : chainBundle< T >

- c -

• chain() : chainBundle< T >
• chainBundle() : chainBundle< T >
• checkEvolution() : denseFisherMetric , softAbsMetric , diagOuterSoftAbsMetric , baseHamiltonian , diagSoftAbsMetric , outerSoftAbsMetric
• checkIntError() : chainBundle< T >
• clearHistory() : baseHamiltonian
• clearSamples() : chainBundle< T >
• computeSummaryStats() : chainBundle< T >
• constMetric() : constMetric

- d -

• denseConstMetric() : denseConstMetric
• denseFisherMetric() : denseFisherMetric
• diagConstMetric() : diagConstMetric
• diagOuterSoftAbsMetric() : diagOuterSoftAbsMetric
• diagSoftAbsMetric() : diagSoftAbsMetric
• dim() : baseHamiltonian
• disengageAdaptation() : chainBundle< T >
• displayState() : baseHamiltonian , denseFisherMetric , diagOuterSoftAbsMetric , diagSoftAbsMetric , softAbsMetric
• dPhidq() : dynamMetric , outerSoftAbsMetric , softAbsMetric , denseFisherMetric , diagOuterSoftAbsMetric , diagSoftAbsMetric
• dTaudp() : denseFisherMetric , outerSoftAbsMetric , diagOuterSoftAbsMetric , dynamMetric , diagSoftAbsMetric , softAbsMetric
• dTaudq() : softAbsMetric , diagSoftAbsMetric , diagOuterSoftAbsMetric , denseFisherMetric , dynamMetric , outerSoftAbsMetric
• dynamMetric() : dynamMetric

- e -

• eigenDeco() : softAbsMetric
• engageAdaptation() : chainBundle< T >
• ESS() : chainBundle< T >
• evolve() : chainBundle< T >
• evolveQ() : baseHamiltonian , dynamMetric , diagConstMetric , denseConstMetric

- f -

• fComputeCholeskyG() : denseFisherMetric
• fComputeDiagH() : diagSoftAbsMetric
• fComputeG() : denseFisherMetric
• fComputeGradDiagH() : diagSoftAbsMetric
• fComputeGradG() : denseFisherMetric
• fComputeGradH() : softAbsMetric
• fComputeH() : outerSoftAbsMetric , softAbsMetric , diagOuterSoftAbsMetric
• fComputeMetric() : denseFisherMetric , diagOuterSoftAbsMetric , diagSoftAbsMetric , dynamMetric , outerSoftAbsMetric , softAbsMetric
• fConstraint() : chainBundle< T >
• fEvolveP() : constMetric
• fHatPhi() : dynamMetric
• fHatT() : dynamMetric
• fHatTau() : dynamMetric
• finishEvolveP() : baseHamiltonian , constMetric , dynamMetric
• fLambdaDot() : outerSoftAbsMetric
• fLogSumExp() : chainBundle< T >
• fNormal() : chainBundle< T >
• fPrepareSpatialGradients() : outerSoftAbsMetric , diagOuterSoftAbsMetric , diagSoftAbsMetric , dynamMetric , softAbsMetric
• fUpdateP() : dynamMetric , softAbsMetric

- g -

• G() : denseFisherMetric
• GL() : denseFisherMetric
• gradV() : softAbsBayesLogReg , flatFunnel , fisherBayesLogReg , baseHamiltonian , softAbsFunnel

- h -

• H() : baseHamiltonian

- i -

• initAdaptation() : chainBundle< T >
• isNaN() : baseHamiltonian

- l -

• Lambda() : softAbsMetric
• lambdaDotP() : softAbsMetric

- m -

• massInv() : diagConstMetric
• minESS() : chainBundle< T >
• movingAcceptRate() : baseHamiltonian

- n -

• nChains() : chainBundle< T >
• nLeapfrog() : chainBundle< T >

- o -

• outerSoftAbsMetric() : outerSoftAbsMetric

- p -

• p() : baseHamiltonian
• phi() : dynamMetric
• prepareEvolution() : denseFisherMetric , baseHamiltonian , dynamMetric , outerSoftAbsMetric

- q -

• q() : baseHamiltonian

- r -

• rejectQ() : baseHamiltonian
• restoreStoredPoint() : baseHamiltonian

- s -

• sampleP() : baseHamiltonian , denseConstMetric , diagConstMetric , softAbsMetric , diagOuterSoftAbsMetric , denseFisherMetric , diagSoftAbsMetric , outerSoftAbsMetric
• samples() : chainBundle< T >
• sampleWindows() : baseHamiltonian
• saveAsAcceptSample() : baseHamiltonian
• saveAsRejectSample() : baseHamiltonian
• saveCurrentPoint() : baseHamiltonian
• saveTrajectory() : chainBundle< T >
• seed() : chainBundle< T >
• setAdaptIntTime() : chainBundle< T >
• setAdaptMaxLeapfrog() : chainBundle< T >
• setAdaptTargetAccept() : chainBundle< T >
• setAverageDecay() : baseHamiltonian
• setFixedPointThreshold() : dynamMetric
• setInvMass() : denseConstMetric
• setMaxLagCalc() : chainBundle< T >
• setMaxLagDisplay() : chainBundle< T >
• setMaxNumFixedPoint() : dynamMetric
• setNumLeapfrog() : chainBundle< T >
• setNumSubsample() : chainBundle< T >
• setProbStepSizeJerk() : chainBundle< T >
• setSoftAbsAlpha() : softAbsMetric , diagSoftAbsMetric , diagOuterSoftAbsMetric , outerSoftAbsMetric
• setStepSize() : chainBundle< T >
• setStepSizeJerk() : chainBundle< T >
• setStepSizeJitter() : chainBundle< T >
• setTemperAlpha() : chainBundle< T >
• setVerbosity() : chainBundle< T >
• setWindowSize() : chainBundle< T >
• softAbsMetric() : softAbsMetric
• stepSize() : chainBundle< T >
• storeSamples() : chainBundle< T >
• supportNormal() : baseHamiltonian
• supportViolated() : baseHamiltonian

- t -

• T() : baseHamiltonian , denseConstMetric , diagConstMetric , softAbsMetric , diagOuterSoftAbsMetric , denseFisherMetric , diagSoftAbsMetric , outerSoftAbsMetric
• tau() : softAbsMetric , denseFisherMetric , diagOuterSoftAbsMetric , dynamMetric , outerSoftAbsMetric , diagSoftAbsMetric
• transition() : chainBundle< T >

- u -

• updateAdaptation() : chainBundle< T >
• updateMetroStats() : baseHamiltonian

- v -

• V() : baseHamiltonian , fisherBayesLogReg , softAbsFunnel , softAbsBayesLogReg , flatFunnel
• verboseEvolve() : chainBundle< T >

- ~ -

• ~chainBundle() : chainBundle< T >