chainBundle< T > Member List

This is the complete list of members for chainBundle< T >, including all inherited members.

addChain(T *object)	chainBundle< T >	[inline]
burn(const int nBurn=100, const int nCheck=100, const double minR=1.1, const bool verbose=true)	chainBundle< T >
chain(const int i)	chainBundle< T >	[inline]
chainBundle(Random &random)	chainBundle< T >	[explicit]
checkIntError(const int i, const int N, const int f=1)	chainBundle< T >
clearSamples()	chainBundle< T >
computeSummaryStats(const int b, const bool verbose=true, std::ofstream *outputFile=NULL)	chainBundle< T >
disengageAdaptation()	chainBundle< T >	[inline]
engageAdaptation()	chainBundle< T >	[inline]
ESS(int i)	chainBundle< T >	[inline]
evolve(T *chain, const double epsilon)	chainBundle< T >
fConstraint(T *chain)	chainBundle< T >	[inline, protected, virtual]
fLogSumExp(double a, double b)	chainBundle< T >	[protected]
fNormal(T *chain)	chainBundle< T >	[inline, protected, virtual]
initAdaptation()	chainBundle< T >
mAdaptCounter	chainBundle< T >	[protected]
mAdaptGamma	chainBundle< T >	[protected]
mAdaptHBar	chainBundle< T >	[protected]
mAdaptIntTime	chainBundle< T >	[protected]
mAdaptKappa	chainBundle< T >	[protected]
mAdaptLogEpsBar	chainBundle< T >	[protected]
mAdaptMaxLeapfrog	chainBundle< T >	[protected]
mAdaptMu	chainBundle< T >	[protected]
mAdaptStepSize	chainBundle< T >	[protected]
mAdaptT0	chainBundle< T >	[protected]
mAdaptTargetAccept	chainBundle< T >	[protected]
mChains	chainBundle< T >	[protected]
mChar	chainBundle< T >	[protected]
mConstraint	chainBundle< T >	[protected]
mESS	chainBundle< T >	[protected]
mExternalMean	chainBundle< T >	[protected]
mExternalVar	chainBundle< T >	[protected]
minESS()	chainBundle< T >	[inline]
mIt	chainBundle< T >	[protected]
mMaxLagCalc	chainBundle< T >	[protected]
mMaxLagDisplay	chainBundle< T >	[protected]
mNumFixedPoint	chainBundle< T >	[protected]
mNumLeapfrog	chainBundle< T >	[protected]
mNumSamples	chainBundle< T >	[protected]
mNumSubsample	chainBundle< T >	[protected]
mProbStepSizeJerk	chainBundle< T >	[protected]
mRandom	chainBundle< T >	[protected]
mRefStats	chainBundle< T >	[protected]
mSampleE	chainBundle< T >	[protected]
mSamples	chainBundle< T >	[protected]
mStepSize	chainBundle< T >	[protected]
mStepSizeJerk	chainBundle< T >	[protected]
mStepSizeJitter	chainBundle< T >	[protected]
mStoreSamples	chainBundle< T >	[protected]
mTemperAlpha	chainBundle< T >	[protected]
mUseExternalMoments	chainBundle< T >	[protected]
mVerbosity	chainBundle< T >	[protected]
mWindowSize	chainBundle< T >	[protected]
nChains()	chainBundle< T >	[inline]
nLeapfrog()	chainBundle< T >	[inline]
samples()	chainBundle< T >	[inline]
saveTrajectory(std::ofstream &outputFile, const int i=0)	chainBundle< T >
seed(const double min, const double max)	chainBundle< T >
seed(const int i, const double min, const double max)	chainBundle< T >
setAdaptIntTime(double t)	chainBundle< T >	[inline]
setAdaptMaxLeapfrog(int n)	chainBundle< T >	[inline]
setAdaptTargetAccept(double a)	chainBundle< T >	[inline]
setMaxLagCalc(int n)	chainBundle< T >	[inline]
setMaxLagDisplay(int n)	chainBundle< T >	[inline]
setNumLeapfrog(const int n)	chainBundle< T >	[inline]
setNumSubsample(const int n)	chainBundle< T >	[inline]
setProbStepSizeJerk(const double p)	chainBundle< T >
setStepSize(const double s)	chainBundle< T >	[inline]
setStepSizeJerk(const double j)	chainBundle< T >
setStepSizeJitter(const double j)	chainBundle< T >
setTemperAlpha(const double a)	chainBundle< T >	[inline]
setVerbosity(const unsigned int v)	chainBundle< T >	[inline]
setWindowSize(const int n)	chainBundle< T >
stepSize()	chainBundle< T >	[inline]
storeSamples(const bool store=true)	chainBundle< T >	[inline]
transition()	chainBundle< T >
transition(int i)	chainBundle< T >
transition(T *chain)	chainBundle< T >
updateAdaptation(double metropolisProb)	chainBundle< T >
useExternalMoments(VectorXd &mean, VectorXd &var) (defined in chainBundle< T >)	chainBundle< T >	[inline]
verboseEvolve(T *chain, const double epsilon)	chainBundle< T >
~chainBundle()	chainBundle< T >